Execution
- Clone the repo to your machine
git clone https://github.com/bio-TAGI/Hackathon.git
cd Hackathon
- Create and activate the virtual environment
conda env create -f nextflow_conda_env.yml
conda activate nextflow
- Run the wokflow with default parameters.
cd Nextflow
nextflow run main.nf
- If you had to stop the workflow run, or if some error occurred, you can always resume the execution as follows:
nextflow run main.nf -resume
- Specifying parameters from the command line
nextflow run main.nf --param1 value1\
--param2 value2\
--paramn valuen # these are generic names, not actual parameters for the pipeline